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1

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 443 || Comparison of Protein Force Fields for Molecular Dynamics Simulations

Year:

2008

Language:

english

File:

PDF, 347 KB

english, 2008

2

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 1215 ||

Year:

2015

Language:

english

File:

PDF, 15.45 MB

english, 2015

3

Effect of impact loading temperature on local changes in the structure of high-carbon steel

T. M. Ravitskaya, I. M. Lyubarskii, D. S. Kazarnovskii, V. V. Kukol', D. B. Voskoboinikov, V. I. Yaremenko, A. N. Klimenko, A. M. Fadeeva

Journal:

Metal Science and Heat Treatment

Year:

1968

Language:

english

File:

PDF, 516 KB

english, 1968

4

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 443 || Molecular Docking

Year:

2008

Language:

english

File:

PDF, 268 KB

english, 2008

5

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 443 ||

Year:

2008

Language:

english

File:

PDF, 7.50 MB

english, 2008

6

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 443 || Monte Carlo Simulations

Year:

2008

Language:

english

File:

PDF, 285 KB

english, 2008

7

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 1215 || Current Status of Protein Force Fields for Molecular Dynamics Simulations

Year:

2015

Language:

english

File:

PDF, 467 KB

english, 2015

8

Site-specific examination of secondary structure and orientation determination in membrane proteins: The peptidic 13C18O group as a novel infrared probe

Jaume Torres, Andreas Kukol, Jonathan M. Goodman, Isaiah T. Arkin

Journal:

Year:

2001

Language:

english

File:

PDF, 83 KB

english, 2001

9

Methyl group effect on the proton affinity of methylated acetophenones studied by two mass spectrometric techniques

A. Kukol, F. Strehle, G. Thielking, H.-Fr. Grützmacher

Journal:

Journal of Mass Spectrometry

Year:

1993

Language:

english

File:

PDF, 419 KB

english, 1993

10

Analysis of flurothyl-induced myoclonus in inbred strains of mice

Dominick Papandrea, Whitney S. Kukol, Tara M. Anderson, Bruce J. Herron, Russell J. Ferland

Journal:

Epilepsy Research

Year:

2009

Language:

english

File:

PDF, 583 KB

english, 2009

11

Label-free electrical detection of DNA hybridization for the example of influenza virus gene sequences

Andreas Kukol, Peng Li, Pedro Estrela, Paul Ko-Ferrigno, Piero Migliorato

Journal:

Analytical Biochemistry

Year:

2008

Language:

english

File:

PDF, 381 KB

english, 2008

12

Enhancing resolution and sensitivity of 17O solid-state NMR through combining double rotation, 1H decoupling and satellite modulation for biomolecular applications

A.P. Howes, T. Anupõld, V. Lemaitre, A. Kukol, A. Watts, A. Samoson, M.E. Smith, R. Dupree

Journal:

Chemical Physics Letters

Year:

2006

Language:

english

File:

PDF, 142 KB

english, 2006

13

Systematic molecular dynamics searching in a lipid bilayer: Application to the glycophorin A and oncogenic ErbB-2 transmembrane domains

Andrew J. Beevers, Andreas Kukol

Journal:

Journal of Molecular Graphics and Modelling

Year:

2006

Language:

english

File:

PDF, 637 KB

english, 2006

14

Solid-state 17O NMR spectroscopy of a phospholemman transmembrane domain protein: Implications for the limits of detecting dilute 17O sites in biomaterials

Alan Wong, Andrew J. Beevers, Andreas Kukol, Ray Dupree, Mark E. Smith

Journal:

Solid State Nuclear Magnetic Resonance

Year:

2008

Language:

english

File:

PDF, 654 KB

english, 2008

15

Ion channels—analysis and simulation embedded in a flexible environment

Journal:

Computers & Chemistry

Year:

1997

Language:

english

File:

PDF, 310 KB

english, 1997

16

Incorporation of the acetylcholine receptor dimer from Torpedo californica in a peptide supported lipid membrane investigated by surface plasmon and fluorescence spectroscopy

E.K. Schmidt, T. Liebermann, M. Kreiter, A. Jonczyk, R. Naumann, A. Offenhäusser, E. Neumann, A. Kukol, A. Maelicke, W. Knoll

Journal:

Biosensors and Bioelectronics

Year:

1998

Language:

english

File:

PDF, 821 KB

english, 1998

17

Acceptor intercalation

A. P. Mil'ner, Yu. R. Zabrodskii, V. M. Koshkin, V. V. Kukol', E. B. Yagubskii, G. D. Guseinov

Journal:

Journal of Structural Chemistry

Year:

1980

Language:

english

File:

PDF, 512 KB

english, 1980

18

The ordered structures of group IV transition metal monocarbides

B. V. Khaenko, V. V. Kukol', O. A. Gnitetskii, S. V. Sirichenko

Journal:

Powder Metallurgy and Metal Ceramics

Year:

1990

Language:

english

File:

PDF, 495 KB

english, 1990

19

Electrostatic determinants of the ion channel control of the nicotinic acetylcholine receptor ofTorpedo californica

Andreas Kukol, E. Neumann

Journal:

European Biophysics Journal

Year:

1998

Language:

english

File:

PDF, 174 KB

english, 1998

20

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 443 || Calculation of Absolute Protein–Ligand Binding Constants with the Molecular Dynamics Free Energy Perturbation Method

Year:

2008

Language:

english

File:

PDF, 486 KB

english, 2008

21

Consensus virtual screening approaches to predict protein ligands

Journal:

European Journal of Medicinal Chemistry

Year:

2011

Language:

english

File:

PDF, 509 KB

english, 2011

22

Experimentally based orientational refinement of membrane protein models: a structure for the Influenza A M2 H+ channel

Andreas Kukol, Paul D. Adams, Luke M. Rice, Axel T. Brunger, Isaiah T. Arkin

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 740 KB

english, 1999

23

The Transmembrane Domain of the Oncogenic Mutant ErbB-2 Receptor: A Structure Obtained from Site-specific Infrared Dichroism and Molecular Dynamics

Andrew J. Beevers, Andreas Kukol

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 518 KB

english, 2006

24

Structure and dynamics of the kinase IKK-β – A key regulator of the NF-kappa B transcription factor

Munishikha Kalia, Andreas Kukol

Journal:

Journal of Structural Biology

Year:

2011

Language:

english

File:

PDF, 1.41 MB

english, 2011

25

The structure of the HIV-1 Vpu ion channel: modelling and simulation studies

F.S. Cordes, A. Kukol, L.R. Forrest, I.T. Arkin, M.S.P. Sansom, W.B. Fischer

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2001

Language:

english

File:

PDF, 456 KB

english, 2001

26

A Structure for the Trimeric MHC Class II-associated Invariant Chain Transmembrane Domain

Andreas Kukol, Jaume Torres, Isaiah T Arkin

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 371 KB

english, 2002

27

Lipid Models for United-Atom Molecular Dynamics Simulations of Proteins

Journal:

Journal of Chemical Theory and Computation

Year:

2009

Language:

english

File:

PDF, 396 KB

english, 2009

28

Use of a Single Glycine Residue to Determine the Tilt and Orientation of a Transmembrane Helix. A New Structural Label for Infrared Spectroscopy

Torres, Jaume, Kukol, Andreas, Arkin, Isaiah T.

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 123 KB

english, 2000

29

Exploring Models of the Influenza A M2 Channel: MD Simulations in a Phospholipid Bilayer

Forrest, Lucy R., Kukol, Andreas, Arkin, Isaiah T., Peter Tieleman, D., Sansom, Mark S.P.

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 629 KB

english, 2000

30

Mapping the Energy Surface of Transmembrane Helix-Helix Interactions

Torres, Jaume, Kukol, Andreas, Arkin, Isaiah T.

Journal:

Biophysical Journal

Year:

2001

Language:

english

File:

PDF, 917 KB

english, 2001

31

How the amyloid-β peptide and membranes affect each other: An extensive simulation study

Chetan Poojari, Andreas Kukol, Birgit Strodel

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2013

Language:

english

File:

PDF, 1.64 MB

english, 2013

32

vpu Transmembrane Peptide Structure Obtained by Site-Specific Fourier Transform Infrared Dichroism and Global Molecular Dynamics Searching

Kukol, Andreas, Arkin, Isaiah T.

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 388 KB

english, 1999

33

Secondary structure, orientation, and oligomerization of phospholemman, a cardiac transmembrane protein

Andrew J. Beevers, Andreas Kukol

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 261 KB

english, 2006

34

Model of a Putative Pore: The Pentameric α-Helical Bundle of SARS Coronavirus E Protein in Lipid Bilayers

Torres, Jaume, Parthasarathy, Krupakar, Lin, Xin, Saravanan, Rathi, Kukol, Andreas, Liu, Ding Xiang

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 304 KB

english, 2006

35

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 443 || Molecular Dynamics Simulations

Year:

2008

Language:

english

File:

PDF, 2.14 MB

english, 2008

36

Conformational Flexibility of the Peptide Hormone Ghrelin in Solution and Lipid Membrane Bound: A Molecular Dynamics Study

Beevers, Andrew J, Kukol, Andreas

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2006

Language:

english

File:

PDF, 785 KB

english, 2006

37

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 443 || Molecular Dynamics Simulations of Membrane Proteins

Year:

2008

Language:

english

File:

PDF, 2.07 MB

english, 2008

38

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 443 || Comparative Modeling of Proteins

Year:

2008

Language:

english

File:

PDF, 287 KB

english, 2008

39

Large-scale analysis of influenza A virus nucleoprotein sequence conservation reveals potential drug-target sites

Kukol, Andreas, Hughes, David John

Journal:

Year:

2014

Language:

english

File:

PDF, 3.36 MB

english, 2014

40

Synthesis and Photophysics of a Copper-Porphyrin−Styrene−C 60 Hybrid †

Guldi, Dirk M., Nuber, Berthold, Bracher, Paul J., Alabi, Christopher A., MacMahon, Shaun, Kukol, Jonathan W., Wilson, Stephen R., Schuster, David I.

Journal:

Journal of Physical Chemistry A

Year:

2003

Language:

english

File:

PDF, 123 KB

english, 2003

41

Solid-State 17 O NMR of Amino Acids

Pike, K. J., Lemaitre, V., Kukol, A., Anupõld, T., Samoson, A., Howes, A. P., Watts, A., Smith, M. E., Dupree, R.

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 132 KB

english, 2004

42

Influenza A nucleoprotein binding sites for antivirals: current research and future potential

Kukol, Andreas, Patel, Hershna

Journal:

Future Virology

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

43

G-quadruplex formation of FXYD1 pre-mRNA indicates the possibility of regulating expression of its protein product

Dhayan, Hansraj, Baydoun, Anwar R., Kukol, Andreas

Journal:

Archives of Biochemistry and Biophysics

Year:

2014

Language:

english

File:

PDF, 1.94 MB

english, 2014

44

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 1215 || Comparative Modeling of Proteins

Year:

2015

Language:

english

File:

PDF, 349 KB

english, 2015

45

Structure of the Influenza C Virus CM2 Protein Transmembrane Domain Obtained by Site-specific Infrared Dichroism and Global Molecular Dynamics Searching

Kukol, A., Arkin, I. T.

Journal:

Journal of Biological Chemistry

Year:

2000

Language:

english

File:

PDF, 769 KB

english, 2000

46

Large-scale analysis of influenza A virus sequences reveals potential drug target sites of non-structural proteins

Darapaneni, V., Prabhaker, V. K., Kukol, A.

Journal:

Journal of General Virology

Year:

2009

Language:

english

File:

PDF, 469 KB

english, 2009

47

A cellulose-based bioassay for the colorimetric detection of pathogen DNA

Saikrishnan, Deepika, Goyal, Madhu, Rossiter, Sharon, Kukol, Andreas

Journal:

Analytical and Bioanalytical Chemistry

Year:

2014

Language:

english

File:

PDF, 1.76 MB

english, 2014

48

Phospholemman Transmembrane Structure Reveals Potential Interactions with Na+/K+-ATPase

Beevers, A. J., Kukol, A.

Journal:

Journal of Biological Chemistry

Year:

2007

Language:

english

File:

PDF, 529 KB

english, 2007

49

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 1215 || The Use of Experimental Structures to Model Protein Dynamics

Year:

2015

Language:

english

File:

PDF, 1.68 MB

english, 2015

50

[Methods in Molecular Biology] Molecular Modeling of Proteins Volume 1215 || Information-Driven Structural Modelling of Protein–Protein Interactions

Year:

2015

Language:

english

File:

PDF, 2.65 MB

english, 2015